Reading List

From NeuralNetoff

Contents 1 Readings 1.1 Grants 1.2 Seizures 1.3 Imaging 1.3.1 Calcium Imaging 1.3.2 Intrinsic Imaging 1.4 Networks 1.5 Modeling 2 Concepts 2.1 Networks 2.2 Neuronal 2.3 Spectral analysis approach 3 People to get to know

Readings

Grants

• Tay's Innovator proposal
• Young Investigator collaborative epilepsy grant

Seizures

• Computational Epilepsy, Steve Schiff et al., Towards a Dynamics of Seizure Mechanics
• Ziburkus et al., Interneuron and pyramidal cell interplay during in vitro seizure-like events.

• Netoff et al. Epilepsy in SWNs
• Netoff et al. Decreased neuronal synchronization during experimental seizures
• Jefferies on seizures
• Traub and Jefferies on modeling seizures
• Traub's book on modeling CA3
• Barbarosie and Avoli
• Freund and Buzsaki, Interneuons of the Hippocampus
• McBain CJ Inibitory neurons in seizure models

Imaging

Calcium Imaging

• ROPING by Yuste

Intrinsic Imaging

• Haglund and Hochman, Optical Imaging of Epileptiform Activity in Human Neocortex

Networks

• Song et al. Motifs in neuronal networks
• Sporns et al. on making networks using motifs
• Beggs and Plenz on avalanches and scale free networks
• Boccaletti et al, Complex Networks: Structure and dynamics

Modeling

• Izhikevich book
• Pecora article on synchronization stability solutions in coupled Rossler attractors

Concepts

Networks

• Small World Networks
• Scale Free Networks
• Motifs
• Clustering Coef.
• Mean Path length
• Connectivity correlations
• Targeted removal vs random removal of links and nodes
• Network sampling theorems (snowballing) and biases they introduce

Neuronal

• Hodgkin Huxley model of the neuron
• Fitzhugh-Nagumo model
• Hindmarsh and Rose model
• alpha function model of the synapse
• Depolarization Block
• IPSPs and IPSCs
• Synaptic strengths
• Dynamic Plasticity in synapses
• Statistics of coupling between neurons in the Hippocampus and the Entorhinal cortex
• Homeostatic mechanisms Marder, Turrigiano and Prinz
• Seizure quiescent period
• 4-Amino Pyridine potassium channel blocker model of epilepsy
• Ephaptic connections between neurons

Spectral analysis approach

• Restrepo, Ott and Hunt
• Shinomoto & Shimokawa An all-to-all coupling Kuramoto oscillator approach with excitatory and inhibitory neurons
• Spectral graph theory background
• Small World analytical results
• other stuff

People to get to know

• Duane Nykamp- UMN Math
• Rob Clewley- GA state Math
• Mark Kramer- BU Math
• Jeff Stott- UMN Graduate Student in Neuroscience
• Dongyon Kang- UMN Neuralnetoff lab undergraduate